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Publishing activity / Publications / 2006

2006

  1. Baumketner A., Shea J.-E. Folding landscapes of the Alzheimer amyloid-beta(12-28) peptide // J. Mol. Biol., 2006, vol. 362, p.567-579.
  2. Baumketner A., Bernstein S.L., Wyttenbach T., Lazo N.D., Teplow D.B., Bowers M.T., Shea J.-E. Structure of the 21-30 fragment of amyloid Beta protein // Protein Science, 2006, vol. 15, p.1239-1247.
  3. Baumketner A., Bernstein S.L., Wyttenbach T., Bitan G., Teplow D.B., Bowers M.T., Shea J.-E. Amyloid beta-protein monomer-structure: A computational and experimental study // Protein Science, 2006, vol. 15, p.420-428.
  4. Baumketner A., Shea J.-E. The thermodynamics of folding of a beta hairpin peptide probed through replica exchange molecular dynamics simulations // Theor. Chem. Acc., 2006, vol. 116, p.262-273.
  5. Baumketner A., Shea J.-E. The structure of Alzheimer amyloid beta(10-35) peptide probed through exchange molecular dynamics simulations in explicit water // J. Mol. Biol., 2006, vol. 366, p.275-285.
  6. Bizjak A., Rescic J., Kalyuzhnyi Yu.V., Vlachy V. Theoretical aspects and computer simulations of flexible charged oligomers in salt-free solutions // J.Chem.Phys., 2006, vol. 125, 214907:1-10.
  7. Blavatska V., Dudka M., Folk R., Holovatch Yu. Enhancement of the critical slowing down influenced by extended defects // J. Mol. Liq., 2006, vol. 127, p.60-61.
  8. Blavatska V., von Ferber C., Holovatch Yu. Entropy-induced separation of star polymers in porous media // Phys. Rev. E, 2006, vol. 74, 031801:1-12.
  9. Caillol J.-M., Patsahan O., Mryglod I. Statistical field theory for simple fluids: the collective variables representation // Physica A, 2006, vol. 368, p.326-344.
  10. D. di Caprio, Valisko M., Holovko M., Desho B. Anomalous temperature dependence of the differential capacitance in valence asymmetric electrolytes. Comparison of Monte Carlo simulation results and the field theoretical approach // Mol. Phys., 2006, vol. 104, № 22-24, p.3777-3786.
  11. Ciach A., Patsahan O. Field-theoretic description of ionic crystallization in the restricted primitive model // Phys. Rev. E, 2006, vol. 74, 021508:1-13.
  12. Derzhko O., Krokhmalskii T., Stolze J., Mueller G. Dynamics of quantum spin chains and multi-fermion excitation continua // Physica B, 2006, vol. 378-380C, p.445-446.
  13. Derzhko O., Richter J. Universal low-temperature behavior of frustrated quantum antiferromagnets in the vicinity of the saturation field // Eur. Phys. J. B, 2006, vol. 52, № 1, p.23-36.
  14. Derzhko O., Myhal V. A microscopic theory of photonucleation: Density functional approach to the properties of a fluid of two-level atoms, a part of which is excited // Condens. Matter Phys., 2006, vol. 9, p.703-708.
  15. Derzhko O., Verkholyak T., Krokhmalskii T., Buettner H. The effects of the symmetric and antisymmetric anisotropies on the dynamics of the spin-1/2 XY chain // Physica B, 2006, vol. 378–380, p.443–444.
  16. Derzhko O., Verkholyak T., Krokhmalskii T., Buettner H. Dynamic probes of quantum spin chains with the Dzyaloshinskii-Moriya interaction // Phys. Rev. B, 2006, vol. 73, 214407:1-14.
  17. Derzhko O., Verkholyak T. Dynamic structure factors of the spin-1=2 XX chain with Dzyaloshinskii–Moriya interaction // J. Phys. Soc. Japan, 2006, vol. 75, № 10, 104711: 1-7.
  18. Derzhko O.V., Myhal V.M. The properties of a fluid of two-level atoms, a part of which is excited. Cavitation // J. Phys. Studies, 2006, vol. 10, № 3, p.202-206 (in Ukrainian).
  19. Didukh L.А., Shovgenyuk М.V., Pysanchyn N.S. Electronic methods of images processing for modern technologies of securities protection // Computer Technologies of Printing, 2006, № 15, p.175-187 (in Ukrainian).
  20. Diehl H.W., Shpot M.A., Prudnikov P.V. Boundary critical behaviour at m-axial Lifshitz points of semi-infinite systems with a surface plane perpendicular to a modulation axis // J. Phys. A: Math. Gen., 2006, vol. 39, p.7927-7942.
  21. Diehl H.W., Gruneberg D., Shpot M.A. Fluctuation-induced forces in periodic slabs: Breakdown of epsilon expansion at thebulk critical point and revised field theory // Europhys. Lett., 2006, vol. 75, p.241-247.
  22. Dovhyj Ya., Shovgenyuk М., Kozlovskii Yu. Optical interpretation of the fractional Fourier transform // Collected Physical Papers, 2006, vol. 6, p.56-63 (in Ukrainian).
  23. Druchok M., Kalyuzhnyi Yu., Rescic J., Vlachy V. Analysis of osmotic pressure data for aqueous protein solutions via a multicomponent model // J. Chem. Phys., 2006, vol. 124, 114902:1-8.
  24. Duda Y., Lira-Galeana C. Thermodynamics of asphaltene structure and aggregation // Fluid Phase Equil., 2006, vol. 241, p.257-267.
  25. Dudka M., Folk R., Holovatch Yu., Moser G. Model C critical dynamics of disordered magnets // J. Phys. A, 2006, vol. 39, p.7943-7961.
  26. Duviryak A. Large-j expansion method for two-body Dirac equation // Symmetry, Integrability and Geometry: Methods and Applications (SIGMA) 2, 2006, Paper 029, p.1-12.
  27. Farenyuk O.Ya., Shvaika A.M. Band electron spectrum and thermodynamic properties of the pseudospin-electron model with tunneling splitting of levels // Condens. Matter Phys., 2006, vol. 9, p.135-144.
  28. Friedel M., Baumketner A. and Shea J.-E. Effects of surface tethering on protein folding mechanisms // PNAS, 2006, vol. 103, p.8396-8401.
  29. Henderson D.J., Nikolov A.D., Trokhymchuk A.D., Wasan D.T. Confinement-Induced Structural Forces in Colloidal Systems. - In: Encyclopedia of Surface and Colloid Science, Ed. by P.Somasundaran, 2nd Edition, Boca Raton: Taylor & Francis, 2006, p.1485-1494.
  30. Holovatch Yu. Introduction to renormalization // Condens. Matter Phys., 2006, vol. 9, p.237-262 .
  31. Holovko M.F., Blazhiyevskyi Yu.L. The ionic system free energy in ionic porous media // J. Phys. Studies, 2006, vol. 10, № 3, p.186-191 (in Ukrainian).
  32. Huerta A., Henderson D., Trokhymchuk A. Freezing of two-dimensional hard disks // Phys. Rev. E, 2006, vol. 74, № 1, 012401:1-4.
  33. Ignatyuk V.V., Tokarchuk M.V., Kostrobij P.P. Quantum kinetic equations approach to the description of chemical reactions between adparticles at a metallic surface // Condens. Matter Phys., 2006, vol. 9, p.55-63.
  34. Ilnytskyi J., Saphiannikova M., Neher D. Photo-induced deformations in azobenzene-containing side-chain polymers: molecular dynamics study // Condens. Matter Phys., 2006, vol. 9, p.87-94.
  35. Ivaneyko D., Ilnytskyi J., Berche B., Holovatch Yu. Static and dynamic critical behaviour of 3d random site Ising model: different Monte Carlo algorithms // J. Mol. Liq., 2006, vol. 127, p.69-70.
  36. Ivaneyko D., Ilnytskyi J., Berche B., Holovatch Yu. Local and cluster critical dynamics of the 3d random-site Ising model // Physica A, 2006, vol. 370, p.163-178.
  37. Kalyuzhnyi Yu.V., Cummings P.T. Solution of the mean spherical approximation for polydisperse multi-Yukawa hard-sphere fluid mixture using orthogonal polynomial expansions // J. Chem. Phys., 2006, vol. 124, 114509:1-9.
  38. Kalyuzhnyi Yu. V., Hlushak S.P. Phase coexistance in polydisperse multi-Yukawa hard-sphere fluid: High temperature approximation // J. Chem. Phys., 2006, vol. 125, 034501:1-11.
  39. Kapko V., Matyushov D.V. Theory of solvation in polar nematics // J. Chem. Phys., 2006, vol. 124, p.114904-114913.
  40. Kapko V., Matyshov D.V. Dynamical arrest of electron transfer in Liquid Crystalline Solvents // J. Phys. Chem. B., 2006, vol. 110, p.13184-13194.
  41. Kobryn A.E., Yamaguchi T., Hirata F. Toward the microscopic description of dynamical properties of molecular liquids: the pressure effect on diffusion coefficient and orientational relaxation time by means of the memory equation approach. – In: Lecture Notes of “Sokendai Asian Winter School” held in February 20–23, 2006, in Okazaki Conference Center at the Institute for Molecular Science, p.140-150.
  42. Kobryn A.E., Yamaguchi T., Hirata F. Study of anomalous mobility of polar molecular solutions by means of the site-site memory equation formalism // J. Mol. Liq., 2006, vol. 125, p.14-21.
  43. Korynevskii N.A., Solovyan V.B. Ferroelectric - Antiferroelectric Mixed Systems. Equation of State, Thermodynamic Functions // Condens. Matter Phys., 2006, vol. 9, p.187-191.
  44. Korynevskii N.A., Solovyan V.B. Non-linearity Effects in Mixed Hydrogen Bonded Ferroelectrics. Phase Diagrams, Phase Transitions, Thermodynamic Functions // Reviews of Advanced Materials Science, 2006, vol. 12, p.90-96.
  45. Korynevskii N.A. On the calculation of static dielectric susceptibility for lava-like fuel-containing materials of “Shelter” object // Visnyk of the National University “Lvivs’ka Politechnika”. Physical and mathematical sciences, 2006, p.81-90 (in Ukrainian).
  46. Kostrobii P., Markovych B., Vasylenko A., Tokarchuk M., Rudavskii Yu. Nonequilibrium statistical Zubarev’s operator and Green’s functions for an inhomogeneous electron gas // Condens. Matter Phys., 2006, vol. 9, p.519-533.
  47. Kostrobii P.P., Tokarchuk M.V., Alekseev V.I. Time evolution modelling of the surface cover for catalytic synthesis of carbonic acid gas // Phys. Chem. Solid. Stat., 2006, vol. 7, № 1, p.25-33 (in Ukrainian).
  48. Kozlovskii M.P., Pylyuk I.V., Prytula O.O. Microscopic description of the critical behavior of three-dimensional Ising-like systems in an external field // Phys. Rev. B, 2006, vol. 73, 174406:1-13.
  49. Kozlovskii M.P., Pylyuk I.V., Prytula O.O. Critical behaviour of a three-dimensional one-component magnet in strong and weak external fields at T>Tc // Physica A, 2006, vol. 369, p.562-576.
  50. Kozlovskii M.P., Pylyuk I.V., Prytula O.O. Free energy and equation of state of Ising-like magnet near the critical point // Nucl. Phys. B, 2006, vol. 753, p.242-251.
  51. Levitskii R.R., Baran O.R., Lisnii B.M. Phase diagrams of spin-1 Ising model with bilinear and quadrupolar interactions under magnetic field. Two-particle cluster approximation // Eur. Phys. J. B, 2006, vol. 50, p.439-443.
  52. Lipinski I.E., Kuriata J., Korynevskii N.A., Sobon M. A Correlation Between EPR and Dielectric Studies for LBO Doped with Manganese // Reviews of Advanced Materials Science, 2006, vol. 12, p.150-153.
  53. Matveev O.P., Shvaika A.M. Charge and magnetic states for the Hubbard model on a three-site cluster // J. Phys. Studies, 2006, vol. 10, № 3, p.207-218.
  54. Omelyan I.P. Extrapolated gradientlike algorithms for molecular dynamics and celestial mechanics simulations // Phys. Rev. E, 2006, vol. 74, p.036703:1–10.
  55. Omelyan I.P., Fenz W., Folk R., Mryglod I.M. Phase diagrams of Ising fluids with Yukawa-Lennard-Jones interactions from an integral equation approach // Europ. Phys. Jour. B, 2006, vol. 51, № 1, p.101-110.
  56. Patsahan O., Mryglod I. A mesoscopic field theory of ionic systems versus a collective variable approach // J. Phys. A: Math. Gen, 2006, vol. 39, p.L583-L588.
  57. Patsahan O., Mryglod I., Patsahan T. Gas-liquid critical point in ionic fluids // J. Phys.: Condens. Matter, 2006, vol. 18, p.10223-10235.
  58. Patsahan O., Mryglod I. Functional representation for the grand partition function of a multicomponent system of charged particles: Correlation functions of the reference system // Condens. Matter Phys., 2006, vol. 9, p.659-668.
  59. Pavlenko N., Kopp T. Interface controlled electronic charge inhomogeneities in correlated heterostructures // Phys. Rev. Lett., 2006, vol. 97, 187001:1-4.
  60. Pylyuk I.V. Three-dimensional Ising-like system in an external field. Microscopic approach to description of the critical behaviour using the asymmetric ?4 model // J. Magn. Magn. Mater, 2006, vol. 305, p.216-220.
  61. Portnyagin D. Holder continuity of weak solutions to nondiagonal singular parabolic systems of three equations // Annales Polonici Mathematici, 2006, vol. 88, № 3, p.205-227.
  62. Portnyagin D. Boundedness of weak solutions of nondiagonal singular parabolic system equations // Mathematical methods and physico-mechanical fields, 2006, vol. 49, № 2, p.117-125 (in Ukrainian).
  63. Richter J., Derzhko O., Krokhmalskii T. Finite-temperature order-disorder phase transition in a frustrated bilayer quantum Heisenberg antiferromagnet in a strong magnetic field // Phys. Rev. B, 2006, vol. 74, 144430:1-5.
  64. Shchur Ya. On the vibrational properties of CsD2PO4 crystal // Phys. stat. sol. (b), 2006, vol. 244, p.569-577.
  65. Shchur Ya. Lattice dynamics study and specific heat of CsH2PO4 and CsD2PO4 // Phys. Rev. B, 2006, vol. 74, 054301:1-8.
  66. Shea J.-E., Friedel M. and Baumketner A. Simulations of protein folding // Rev. Comp. Chem., 2006, vol. 22, p.169-197.
  67. Shovgenyuk M.V., Kozlovskii Yu. M. Self-images of periodic phase elements in the fractional Fourier transform domain // Proc. SPIE, 2006, vol. 6027 ICO20: Optical Information Processing, p.??-??.
  68. Shovgenyuk М.V., Didukh L.А. Graphic Element for Securities Protection // Computer Technologies of Printing, 2006, № 16, p.245-251 (in Ukrainian).
  69. Shovgenyuk М. Superposition optical images in the fractional Fourier transform domain // Collected Physical Papers, 2006, vol. 6, p.143-164 (in Ukrainian).
  70. Shvaika A.M., Vorobyov O., Freericks J.K., Devereaux T.P. Resonant Enhancement of Electronic Raman Scattering // J. Phys. Chem. Solids, 2006, vol. 67, № 1-3, p.336-339.
  71. Shvaika A.M. On the spectral relations for multitime correlation functions // Condens. Matter Phys., 2006, vol. 9, p.447-458.
  72. Sokolovska T.G., Sokolovskii R.O., Patey G.N. Colloidal interactions in nematic fluids // Phys. Rev. E, 2006, vol. 73, 020701:1-4.
  73. Sokolovska T.G., Sokolovskii R.O., Patey G.N. Nematic-fluid structure in wall-field geometry II The direct correlation function // J. Chem. Phys., 2006, vol. 125, 034903:1-11.
  74. Sokolovskii R.O., Thachuk M., and Patey G.N. Tracer diffusion in hard sphere fluids: from molecular to hydrodynamic regimes // J. Chem. Phys., 2006, vol. 125, 204502:1-10.
  75. Soto N., Sanmiguel N., Reyes Y., Dominguez M.A., Duda Y., Vazquez F. On the adhesive properties of vinil-acrylic latex particles functionalized with acrylic acid // Int. J. Polym. Mater., 2006, vol. 55, p.187-201.
  76. Soto P., Baumketner A. and Shea J.-E. Aggregation of polyalanine in a hydrophobic environment // J. Chem. Phys., 2006, vol. 124, 134904:1-7.
  77. Stasyuk I.V., Stetsiv R.Ya., Yurechko R.Ya. Dynamics of charge transfer in quasi-one-dimensional hydrogen-bonded structures // J. Phys. Studies, 2005, vol. 9, № 3, p.349-357(in Ukrainian).
  78. Stasyuk I.V., Mysakovych T.S. Raman scattering in strongly correlated electron systems. Strong coupling approximation // J. Phys. Studies, 2006, vol. 10, № 1, p.54-65 (in Ukrainian).
  79. Stasyuk I.V., Hera O.B. Asymmetric Hubbard model within generating functional approach in dynamical mean field theory // Condens. Matter Phys., 2006, vol. 9, p.587-602.
  80. Stasyuk I.V., Krasnov V.O. Pseudospin-electron model spectrum in alloy analogy approxymation // Condens. Matter Phys., 2006, vol. 9, p.725-740.
  81. Stetsiv R.Ya., Krip I.M., Shymchuk T.V., Krasnov V.O. Adsorbtion of cesium and strontium ions on aluminosilicate nanostructures surface and in silicate pores // Phys. Chem. Sol. State, 2006, vol. 7, № 2, p.225-229.
  82. Tabunshchyk K., Hawkeye M., Brett M., Kovalenko A. Tunable defect states in 1-D photonic bandgap nanostructures // Proc. of SPIE, 2006, vol. 6322, p.632207: 1-11.
  83. Teplow D.B., Lazo N.D., Bitan G., Bernstein S., Wyttenbach T., Bowers M.T., Baumketner A., Shea J.-E., Urbanc B., Cruz L., Borreguero J., Stanley H.E. Elucidating amyloid beta-protein folding and assembly: A multidisciplinary approach // Acc. Chem. Res., 2006, vol. 39, p.635-645.
  84. Tokarchuk M. Problems and results of investigation of physical-chemical properties of fuel containing materials in the object “Shelter” of CHAPS // Coll. Phys. Papers (Shev. Scien. Society, Commis. of Phys.), 2006, vol. 6, p.319-332 (in Ukrainian).
  85. Tokarchuk M., Chaplia Ye., Chernukha O., Honcharuk V. Mathematical models of radionuclide migration in lava-similar fuel-bearing materials // Engineering Science, 2006, № 2(104), p.23-29 (in Ukrainian).
  86. Trokhymchuk A., Nezbeda I., Jirsak J., Henderson D. Erratum: Hard-sphere radial distribution function again // J. Chem. Phys., 2006, vol. 124, 149902:1.
  87. Usatenko Z. Adsorption of long-flexible polymer chains at planar surfaces: Scaling analysis and critical exponents // J. Stat. Mech.: Theory and Experiment, 2006, P03009:1-19.
  88. Vakarin E.V., Badiali J.P. On a mechanism of Low-Pressure Insertion of Chain Molecules into Crystalline Matrices // J. Phys. Chem. B, 2006, vol. 110, p.18074-18077.
  89. Vakarin E.V., Badiali J.P. Maximum entropy approach to power-law distributions in coupled dynamic-stochastic systems // Phys. Rev. E, 2006, vol. 74, 036120:1-5.
  90. Vakarin E.V., Duda Y., Badiali J.P. Negative linear compressibility in confined dilatating systems // J. Chem. Phys., 2006, vol. 124, 144515:1-6.
  91. Verkholyak T., Honecker A., Brenig W. Jordan-Wigner approach to the frustrated spin one-half XXZ chain // Eur. Phys. J. B., 2006, vol. 49, p.283–287.
  92. Wilson M.R., Stimson L.M., Ilnytskyi J.M. The influence of lateral and terminal substitution on the structure of a liquid crystal dendrimer in nematic solution: A computer simulation study // Liquid Crystals, 2006, vol. 33, № 10, p.1167-1175.
  93. Yukhnovskii I.R., Holovko M.F. Introduction to collected articles “Soft matter physics”; Lviv-Kyiv, 2006, p.9-15 (in Ukrainian).
  94. Zaburannyi O. Discrete lattice surface models and their quantum spin counterparts // J. Phys. Studies, 2006, vol. 10, № 2, p.98-107 (in Ukrainian).